ngs-analysis
Introduction
Pre-Requisites
File Formats
FastA
FastQ
Bed
SAM
VCF
GFF3
Alignment
Visualization
Variant Calling
Pre-Processing
Variant Discovery
RNA-Seq
Aligning RNA-seq data
DESeq
DESeq2
Installing R modules on Dalma
HPC
Edit Files
Atom
SSH Mount
Neovim
SLURM
Modules Quick Reference
Gencore Infrastructure
Gencore Modules - Variant Detection
Gencore Software
HPCRunner
BioX Workflow
ChiPseq analysis
De novo genome assembly
Pre-Processing and QC
Prepare your environment and copy the datasets
Exercise: de novo assembly using the bioinformatics workflows
Individual commands of the assembly workflow
Metagenomics
Quality Control
Taxonomic Classification
Functional Analysis
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